sampleSizeBudgetCalculation.libPrepCell: Estimate possible sample size depending on the total cost,...

In heiniglab/scPower: Experimental design framework for scRNAseq population studies (eQTL and DE)

Estimate possible sample size depending on the total cost, using library preparation costs per cell

Description

A balanced design with two classes is assumed for the sample size calculation.

Usage

sampleSizeBudgetCalculation.libPrepCell(
  nCells,
  readDepth,
  totalCost,
  prepCostCell,
  costFlowCell,
  readsPerFlowcell
)

Arguments

nCells	Cells per individual
readDepth	Read depth per cell
totalCost	Experimental budget
prepCostCell	Library preparation costs per cell
costFlowCell	Cost of one flow cells for sequencing
readsPerFlowcell	Number reads that can be sequenced with one flow cell

Value

Number of samples that can be measured with this budget and other parameters

heiniglab/scPower documentation built on Jan. 9, 2025, 12:13 p.m.