sizeFactorsPosCounts: Reimplementation of DEseq2 function for size factors with...

In heiniglab/scPower: Experimental design framework for scRNAseq population studies (eQTL and DE)

Reimplementation of DEseq2 function for size factors with option poscounts

Description

Alternative to the standard size factor, better suited for scRNAseq data with a lot of zero values

Usage

sizeFactorsPosCounts(counts)

Arguments

counts

UMI count matrix

Details

Original code: Bioconductor R package DESeq2, Michael Love, Simon Anders, Wolfgang Huber, DOI 10.18129/B9.bioc.DESeq2

Value

size factors to normalize each cell

heiniglab/scPower documentation built on Jan. 9, 2025, 12:13 p.m.