umi.gamma.relation: Estimate linear relationship between the gamma mixed...
In heiniglab/scPower: Experimental design framework for scRNAseq population studies (eQTL and DE)
View source: R/expression_fit.R
umi.gamma.relation R Documentation
Estimate linear relationship between the gamma mixed parameter and the mean UMI counts
or mean read counts (for smartseq data)
Description
Estimate linear relationship between the gamma mixed parameter and the mean UMI counts
or mean read counts (for smartseq data)
Usage
umi.gamma.relation(gamma.fits, variable = "mean.umi")
Arguments
gamma.fits
Parameters from the fitted gamma function (p1,p2/p3,mean1,mean2,sd1,sd2),
calculated in mixed.gamma.estimation and converted with convert.gamma.parameters,
and a column with mean UMI values, can be calculated in mean.umi.calculation
variable
Name of the variable to fit the parameters against (should contain umi counts or read counts)
Value
Linear fit for each gamma parameter
heiniglab/scPower documentation built on Jan. 9, 2025, 12:13 p.m.
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View source: R/expression_fit.R
| umi.gamma.relation | R Documentation |
Estimate linear relationship between the gamma mixed parameter and the mean UMI counts or mean read counts (for smartseq data)
Description
Estimate linear relationship between the gamma mixed parameter and the mean UMI counts or mean read counts (for smartseq data)
Usage
umi.gamma.relation(gamma.fits, variable = "mean.umi")
Arguments
gamma.fits |
Parameters from the fitted gamma function (p1,p2/p3,mean1,mean2,sd1,sd2), calculated in mixed.gamma.estimation and converted with convert.gamma.parameters, and a column with mean UMI values, can be calculated in mean.umi.calculation |
variable |
Name of the variable to fit the parameters against (should contain umi counts or read counts) |
Value
Linear fit for each gamma parameter
R Package Documentation
Browse R Packages
We want your feedback!
Note that we can't provide technical support on individual packages. You should contact the package authors for that.
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