Files in hms-dbmi/brainmapr
Visualizes ISH gene expression data from the Allen Brain Atlas
.gitignore
.travis.yml
DESCRIPTION
NAMESPACE
R/functions.R
README.md
README_data.md
data/annot3D.rda
data/gannot3D.rda
data/mat.rda
data/structureID.rda
data/vol3D.rda
man/annot3D.Rd
man/brainmapr.Rd
man/gannot3D.Rd
man/genePlot.Rd
man/genePlotWeightedComp.Rd
man/genePlotWeightedComp2.Rd
man/getChildren.Rd
man/getId.Rd
man/getIds.Rd
man/getName.Rd
man/getStructureIds.Rd
man/mat.Rd
man/plotEnergy.Rd
man/plotProjection.Rd
man/plotProjectionXray.Rd
man/plotSlice.Rd
man/plotSliceComp.Rd
man/plotSliceXray.Rd
man/structureID.Rd
man/structurePlot.Rd
man/vol3D.Rd
sample/mouse_compiled.png
sample/mouse_projection.png
sample/mouse_slice_forebrain.png
sample/mouse_slice_gene_exp.png
tests/tests.R
vignettes/brainmapr-vignette.md
vignettes/figures/brainmapr-gene1 plot-1.png
vignettes/figures/brainmapr-gene1 plot-2.png
vignettes/figures/brainmapr-gene1 structure plot-1.png
vignettes/figures/brainmapr-gene1 structure plot-2.png
vignettes/figures/brainmapr-gene2 plot-1.png
vignettes/figures/brainmapr-gene2 plot-2.png
vignettes/figures/brainmapr-gene2 structure plot-1.png
vignettes/figures/brainmapr-gene2 structure plot-2.png
vignettes/figures/brainmapr-group gene plot-1.png
vignettes/figures/brainmapr-group gene plot-2.png
vignettes/figures/brainmapr-group gene weighted plot-1.png
vignettes/figures/brainmapr-group gene weighted plot-2.png
vignettes/figures/brainmapr-structure plot-1.png
vignettes/figures/brainmapr-structure plot-2.png
vignettes/figures/brainmapr-whole mouse plot-1.png
vignettes/figures/brainmapr-whole mouse plot-2.png
vignettes/figures/pagoda-forebrain-1.png
vignettes/figures/pagoda-forebrain-2.png
vignettes/figures/pagoda-main split and comparison-1.png
vignettes/figures/pagoda-main split and comparison-2.png
vignettes/figures/pagoda-main split and comparison-3.png
vignettes/figures/pagoda-main split and comparison-4.png
vignettes/figures/pagoda-main split and comparison-5.png
vignettes/figures/pagoda-proximal distal placement-1.png
vignettes/figures/pagoda-proximal distal-1.png
vignettes/figures/pagoda-proximal distal-2.png
vignettes/figures/pagoda-proximal distal-3.png
vignettes/figures/pagoda-proximal distal-4.png
vignettes/figures/pagoda-whole mouse-1.png
vignettes/figures/pagoda-whole mouse-2.png
vignettes/pagoda-vignette.md
