plotSliceComp: Plot slice of 3D volume without thresholding and allowing for...
In hms-dbmi/brainmapr: Visualizes ISH gene expression data from the Allen Brain Atlas
Description
Usage
Arguments
Examples
Description
Plot slice of 3D volume without thresholding and allowing for negative expression values. Used for comparing spatial expression of upregulated vs. downregulated gene sets.
Usage
1
2
plotSliceComp(mat3D, slice, col = colorRampPalette(c("green", "blue", "black",
"red", "yellow"), space = "Lab")(100), add = F)
Arguments
mat3D
3D volume
slice
Index of slice; limited to dimensions of mat3D
col
Color
add
Boolean whether to overlay onto existing plot
Examples
1
2
data(vol3D)
plotSliceComp(vol3D, 75)
hms-dbmi/brainmapr documentation built on May 17, 2019, 4:35 p.m.
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Description Usage Arguments Examples
Description
Plot slice of 3D volume without thresholding and allowing for negative expression values. Used for comparing spatial expression of upregulated vs. downregulated gene sets.
Usage
1 2 | plotSliceComp(mat3D, slice, col = colorRampPalette(c("green", "blue", "black",
"red", "yellow"), space = "Lab")(100), add = F)
|
Arguments
mat3D |
3D volume |
slice |
Index of slice; limited to dimensions of mat3D |
col |
Color |
add |
Boolean whether to overlay onto existing plot |
Examples
1 2 | data(vol3D)
plotSliceComp(vol3D, 75)
|
R Package Documentation
Browse R Packages
We want your feedback!
Note that we can't provide technical support on individual packages. You should contact the package authors for that.
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