structurePlot: Plot the volume or expression within a Structure

In hms-dbmi/brainmapr: Visualizes ISH gene expression data from the Allen Brain Atlas

Description

Plot the volume or expression within a Structure

Usage

structurePlot(cids, vol, annot, plot = F)

Arguments

cids	Structure ids
vol	3D volume of expression values
annot	3D annotation of volume with structure IDs
plot	Boolean of whether to make 3D plot

Value

tvol 3D volume restricted to just structure of interest

Examples

data(structureID)
data(vol3D)
data(annot3D)
cids <- getStructureIds(structureID, 'pallium')
sect3D <- structurePlot(cids, vol3D, annot3D)  # For whole structure
gpsect3D <- structurePlot(cids, array(mat['Dcx',], dim=dim(gannot3D)), gannot3D)  # For a particular gene

hms-dbmi/brainmapr documentation built on May 17, 2019, 4:35 p.m.