genePlot: Plot total expression of a set of genes

In hms-dbmi/brainmapr: Visualizes ISH gene expression data from the Allen Brain Atlas

Description

Plot total expression of a set of genes

Usage

genePlot(gl, expmat, gannot, t = 0, weights = rep(1, length(gl)),
  plot = F)

Arguments

gl	Gene list
expmat	3D volume of expression
gannot	3D annotation of volume with structure IDs
t	Threshold for removing noise; gene energy levels below this threshold will be removed
weights	List of relative weights corresponding to gene list; default: weighted equally
plot	Boolean of whether to make 3D plot

Value

exp3D 3D volume restricted to weighted gene expression set of interest

Examples

data(mat)
data(gannot3D)
gp3D <- genePlot('Dcx', mat, gannot3D)

hms-dbmi/brainmapr documentation built on May 17, 2019, 4:35 p.m.