getIds: A recursive way to get IDs and names of structure given a...
In hms-dbmi/brainmapr: Visualizes ISH gene expression data from the Allen Brain Atlas
Description
Usage
Arguments
Value
Examples
Description
In the Allen Brain Atlas, a Structure represents a neuroanatomical region of interest. Structures are grouped into Ontologies and organized in a hierarchy or StructureGraph. The StructureGraph for the Developing Mouse Brain Atlas is provided here under data/structureID.rda. This function allows you to browse Structures by name and ID given a name substring.
Usage
1
Arguments
nestedList
A JSON derived nested list of Structure relationships from Allen Brain Atlas's StructureGraph
name
Brain structure name substring
Value
ids A dictionary of Structures that contain the name with their IDs
Examples
1
2
data(structureID)
getIds(structureID, 'pallium')
hms-dbmi/brainmapr documentation built on May 17, 2019, 4:35 p.m.
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Description Usage Arguments Value Examples
Description
In the Allen Brain Atlas, a Structure represents a neuroanatomical region of interest. Structures are grouped into Ontologies and organized in a hierarchy or StructureGraph. The StructureGraph for the Developing Mouse Brain Atlas is provided here under data/structureID.rda. This function allows you to browse Structures by name and ID given a name substring.
Usage
1 |
Arguments
nestedList |
A JSON derived nested list of Structure relationships from Allen Brain Atlas's StructureGraph |
name |
Brain structure name substring |
Value
ids A dictionary of Structures that contain the name with their IDs
Examples
1 2 | data(structureID)
getIds(structureID, 'pallium')
|
R Package Documentation
Browse R Packages
We want your feedback!
Note that we can't provide technical support on individual packages. You should contact the package authors for that.
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