Man pages for hms-dbmi/brainmapr
Visualizes ISH gene expression data from the Allen Brain Atlas
| annot3D | Pixel level 3D Structure annotations of the embryonic 11.5... |
| brainmapr | brainmapr |
| gannot3D | Voxel level 3D Structure annotations of the embryonic 11.5... |
| genePlot | Plot total expression of a set of genes |
| genePlotWeightedComp | Relative expression of two groups using absolute differences |
| genePlotWeightedComp2 | Relative expression of two groups using ratios |
| getChildren | A recursive way to get all the children of a Structure given... |
| getId | A recursive way to get structure IDs and names of structure... |
| getIds | A recursive way to get IDs and names of structure given a... |
| getName | A recursive way to get the name of a Structure given its ID |
| getStructureIds | Get IDs associated with a Structure given the exact Structure... |
| mat | Matrix of gene expression where each row corresponds to a... |
| plotEnergy | Helper function for 3D plotting. Used by 'structurePlot' and... |
| plotProjection | Plot flat projection of a 3D volume |
| plotProjectionXray | 'plotProjection' with colors set to look more like an x-ray |
| plotSlice | Plot slice of 3D volume |
| plotSliceComp | Plot slice of 3D volume without thresholding and allowing for... |
| plotSliceXray | 'plotSlice' with colors set to look more like an x-ray |
| structureID | Parsed StructureGraph for the developing mouse brain.... |
| structurePlot | Plot the volume or expression within a Structure |
| vol3D | Pixel level 3D volume of the embryonic 11.5 day old mouse... |
