inst/app/tests/testthat/_snaps/shinytest2.md

In hms-dbmi/drugseqr: GUI to Explore Single-Cell and Bulk RNA-Seq from Fastq to Pathways and Perturbations

{shinytest2} recording: Single-Cell Tab

Code
  init_files
Output
   [1] "test_data_dir/.gs_dir"                         
   [2] "test_data_dir/.indices_dir"                    
   [3] "test_data_dir/.pert_query_dir"                 
   [4] "test_data_dir/.pert_signature_dir"             
   [5] "test_data_dir/.tx2gene_dir"                    
   [6] "test_data_dir/test_user"                       
   [7] "test_data_dir/test_user/default"               
   [8] "test_data_dir/test_user/default/bulk"          
   [9] "test_data_dir/test_user/default/custom_queries"
  [10] "test_data_dir/test_user/default/single-cell"   
  [11] "test_data_dir/test_user/prev_project.qs"

Code
  dataset_files
Output
   [1] "test_data_dir/.tx2gene_dir/hsapiens_tx2gene.qs"                           
   [2] "test_data_dir/test_user/default/single-cell/mock_10x"                     
   [3] "test_data_dir/test_user/default/single-cell/mock_10x/counts.qs"           
   [4] "test_data_dir/test_user/default/single-cell/mock_10x/dgclogs.qs"          
   [5] "test_data_dir/test_user/default/single-cell/mock_10x/founder.qs"          
   [6] "test_data_dir/test_user/default/single-cell/mock_10x/resoln.qs"           
   [7] "test_data_dir/test_user/default/single-cell/mock_10x/shell.qs"            
   [8] "test_data_dir/test_user/default/single-cell/mock_10x/snn1"                
   [9] "test_data_dir/test_user/default/single-cell/mock_10x/snn1/annot.qs"       
  [10] "test_data_dir/test_user/default/single-cell/mock_10x/snn1/applied.qs"     
  [11] "test_data_dir/test_user/default/single-cell/mock_10x/snn1/clusters.qs"    
  [12] "test_data_dir/test_user/default/single-cell/mock_10x/snn1/scseq_sample.qs"
  [13] "test_data_dir/test_user/default/single-cell/mock_10x/snn1/summed.qs"      
  [14] "test_data_dir/test_user/default/single-cell/mock_10x/snn_graph.qs"        
  [15] "test_data_dir/test_user/default/single-cell/mock_10x/species.qs"          
  [16] "test_data_dir/test_user/default/single-cell/mock_10x/tlogs.tenx"

Code
  contrast_choices
Output
    test ctrl      name  value testColor ctrlColor            title
  1    1  all CD14 Mono      1   #CDCC5D     white CD14 Mono vs all
  2    1    2 CD14 Mono 1-vs-2   #CDCC5D   #ED665D   CD14 Mono vs 2
  3    1    3 CD14 Mono 1-vs-3   #CDCC5D   #ED97CA   CD14 Mono vs 3
  4    1    4 CD14 Mono 1-vs-4   #CDCC5D   #729ECE   CD14 Mono vs 4
  5    1    5 CD14 Mono 1-vs-5   #CDCC5D   #FF9E4A   CD14 Mono vs 5

Code
  saved_metric_files
Output
  [1] "test_data_dir/test_user/default/single-cell/mock_10x/snn1/saved_metrics.qs"

Code
  change_resoln_files
Output
  [1] "test_data_dir/test_user/default/single-cell/mock_10x/snn2"                
  [2] "test_data_dir/test_user/default/single-cell/mock_10x/snn2/annot.qs"       
  [3] "test_data_dir/test_user/default/single-cell/mock_10x/snn2/applied.qs"     
  [4] "test_data_dir/test_user/default/single-cell/mock_10x/snn2/clusters.qs"    
  [5] "test_data_dir/test_user/default/single-cell/mock_10x/snn2/scseq_sample.qs"
  [6] "test_data_dir/test_user/default/single-cell/mock_10x/snn2/summed.qs"

Code
  integrated_dataset_name
Output
  [1] "mock_10x_integrated_harmony"

Code
  integrated_files
Output
   [1] "test_data_dir/test_user/default/single-cell/mock_10x_integrated_harmony"                     
   [2] "test_data_dir/test_user/default/single-cell/mock_10x_integrated_harmony/args.json"           
   [3] "test_data_dir/test_user/default/single-cell/mock_10x_integrated_harmony/counts.qs"           
   [4] "test_data_dir/test_user/default/single-cell/mock_10x_integrated_harmony/dgclogs.qs"          
   [5] "test_data_dir/test_user/default/single-cell/mock_10x_integrated_harmony/founder.qs"          
   [6] "test_data_dir/test_user/default/single-cell/mock_10x_integrated_harmony/pairs.qs"            
   [7] "test_data_dir/test_user/default/single-cell/mock_10x_integrated_harmony/resoln.qs"           
   [8] "test_data_dir/test_user/default/single-cell/mock_10x_integrated_harmony/shell.qs"            
   [9] "test_data_dir/test_user/default/single-cell/mock_10x_integrated_harmony/snn1"                
  [10] "test_data_dir/test_user/default/single-cell/mock_10x_integrated_harmony/snn1/annot.qs"       
  [11] "test_data_dir/test_user/default/single-cell/mock_10x_integrated_harmony/snn1/applied.qs"     
  [12] "test_data_dir/test_user/default/single-cell/mock_10x_integrated_harmony/snn1/clusters.qs"    
  [13] "test_data_dir/test_user/default/single-cell/mock_10x_integrated_harmony/snn1/scseq_sample.qs"
  [14] "test_data_dir/test_user/default/single-cell/mock_10x_integrated_harmony/snn1/summed.qs"      
  [15] "test_data_dir/test_user/default/single-cell/mock_10x_integrated_harmony/snn_graph.qs"        
  [16] "test_data_dir/test_user/default/single-cell/mock_10x_integrated_harmony/species.qs"          
  [17] "test_data_dir/test_user/default/single-cell/mock_10x_integrated_harmony/tlogs.tenx"

Code
  integrated_clusters
Output
  [1] "1" "2" "3" "4" "5"

hms-dbmi/drugseqr documentation built on Feb. 15, 2024, 10:38 p.m.