format_up_custom: Format uploaded custom query signature
In hms-dbmi/drugseqr: GUI to Explore Single-Cell and Bulk RNA-Seq from Fastq to Pathways and Perturbations
View source: R/modules-drugs-utils.R
format_up_custom R Documentation
Format uploaded custom query signature
Description
Format uploaded custom query signature
Usage
format_up_custom(top_table)
Arguments
top_table
data.frame with logFC, dprime, or effect sizes as column 1
and row.names as HGNC symbols
Value
top_table subsetted to rows with HGNC symbols in CMAP02/L1000 and
with dprime column set to either top_table$dprime, top_table$logFC,
or top_table[,1].
hms-dbmi/drugseqr documentation built on June 24, 2024, 7:03 a.m.
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View source: R/modules-drugs-utils.R
| format_up_custom | R Documentation |
Format uploaded custom query signature
Description
Format uploaded custom query signature
Usage
format_up_custom(top_table)
Arguments
top_table |
data.frame with logFC, dprime, or effect sizes as column 1 and row.names as HGNC symbols |
Value
top_table subsetted to rows with HGNC symbols in CMAP02/L1000 and
with dprime column set to either top_table$dprime, top_table$logFC,
or top_table[,1].
R Package Documentation
Browse R Packages
We want your feedback!
Note that we can't provide technical support on individual packages. You should contact the package authors for that.
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