get_cluster_stats: Get and save cluster stats for single-cell related...

In hms-dbmi/drugseqr: GUI to Explore Single-Cell and Bulk RNA-Seq from Fastq to Pathways and Perturbations

Get and save cluster stats for single-cell related selectizeInputs

Description

Get and save cluster stats for single-cell related selectizeInputs

Usage

get_cluster_stats(
  resoln_dir = NULL,
  scseq = NULL,
  top_tables = NULL,
  use_disk = FALSE,
  sample_comparison = FALSE,
  contrast_dir = NULL
)

Arguments

resoln_dir	Sub directory with single cell dataset info specific to resolution.
scseq	SingleCellExperiment object to get/save stats for. if NULL (Default), will be loaded.
top_tables	List of limma::topTable results used by scSampleComparison for integrated datasets.
use_disk	Should results by saved to disk? used by scSampleComparison to persist results to disk.
sample_comparison	is this for test vs control comparion? Default is FALSE.
contrast_dir	Sub directory with single cell dataset info specific to contrast.

Value

List with cluster stats

hms-dbmi/drugseqr documentation built on Feb. 15, 2024, 10:38 p.m.