get_mds: Get scalings for MDS plots
In hms-dbmi/drugseqr: GUI to Explore Single-Cell and Bulk RNA-Seq from Fastq to Pathways and Perturbations
get_mds R Documentation
Get scalings for MDS plots
Description
For interactive MDS plot of expression values with and without surrogate variable analysis.
Usage
get_mds(exprs, adj, group)
Arguments
exprs
matrix of expression values.
adj
matrix of expression values with surrogate variables/pairs regressed out.
group
Character vector with values 'control' and 'test' indicating group membership.
Value
List of tibbles with MDS scalings with and without SVA
hms-dbmi/drugseqr documentation built on June 24, 2024, 7:03 a.m.
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| get_mds | R Documentation |
Get scalings for MDS plots
Description
For interactive MDS plot of expression values with and without surrogate variable analysis.
Usage
get_mds(exprs, adj, group)
Arguments
exprs |
|
adj |
|
group |
Character vector with values |
Value
List of tibbles with MDS scalings with and without SVA
R Package Documentation
Browse R Packages
We want your feedback!
Note that we can't provide technical support on individual packages. You should contact the package authors for that.
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