get_pred_annot: Get predicted annotation for label transfer

View source: R/modules-sc-utils.R

get_pred_annotR Documentation

Get predicted annotation for label transfer

Description

Clusters with an average prediction scores below min.score retain their original labels.

Usage

get_pred_annot(ref_preds, ref_name, dataset_name, sc_dir)

Arguments

ref_preds

data.frame generated in labelTransferForm on event submit_transfer

ref_name

Name of reference analysis that labels are transfered from.

dataset_name

Name of analysis that labels are transfered to.

sc_dir

Directory containing folders with analyses for ref_name and dataset_name.

Value

Character vector of predicted labels from ref_name.


hms-dbmi/drugseqr documentation built on Feb. 15, 2024, 10:38 p.m.