get_presto_markers: Get cluster markers using presto
In hms-dbmi/drugseqr: GUI to Explore Single-Cell and Bulk RNA-Seq from Fastq to Pathways and Perturbations
get_presto_markers R Documentation
Get cluster markers using presto
Description
Get cluster markers using presto
Usage
get_presto_markers(scseq)
Arguments
scseq
SingleCellExperiment object
Value
list of data.frames, one for each cluster
Examples
if (requireNamespace("SingleCellExperiment", quietly = TRUE)) {
data('object_sce', package = 'presto')
object_sce$cluster <- object_sce$cell_type
markers <- get_presto_markers(object_sce)
}
hms-dbmi/drugseqr documentation built on Feb. 15, 2024, 10:38 p.m.
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| get_presto_markers | R Documentation |
Get cluster markers using presto
Description
Get cluster markers using presto
Usage
get_presto_markers(scseq)
Arguments
scseq |
SingleCellExperiment object |
Value
list of data.frames, one for each cluster
Examples
if (requireNamespace("SingleCellExperiment", quietly = TRUE)) {
data('object_sce', package = 'presto')
object_sce$cluster <- object_sce$cell_type
markers <- get_presto_markers(object_sce)
}
R Package Documentation
Browse R Packages
We want your feedback!
Note that we can't provide technical support on individual packages. You should contact the package authors for that.
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