integrate_scseqs: Integrate multiple scRNA-seq samples
In hms-dbmi/drugseqr: GUI to Explore Single-Cell and Bulk RNA-Seq from Fastq to Pathways and Perturbations
integrate_scseqs R Documentation
Integrate multiple scRNA-seq samples
Description
Integrate multiple scRNA-seq samples
Usage
integrate_scseqs(
scseqs,
species,
tx2gene_dir,
type = c("harmony", "fastMNN", "Azimuth", "symphony"),
pairs = NULL,
hvgs = NULL,
ref_name = NULL
)
Arguments
scseqs
List of SingleCellExperiment objects
type
One of 'harmony' (default) or 'fastMNN' specifying integration to use.
pairs
data.frame with columns 'sample' with sample
names of scseqs and 'pair' with integers indicating paired
samples. If not NULL (default), then harmony includes pairings
as a covariate.
Value
Integrated SingleCellExperiment object.
hms-dbmi/drugseqr documentation built on Feb. 15, 2024, 10:38 p.m.
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| integrate_scseqs | R Documentation |
Integrate multiple scRNA-seq samples
Description
Integrate multiple scRNA-seq samples
Usage
integrate_scseqs(
scseqs,
species,
tx2gene_dir,
type = c("harmony", "fastMNN", "Azimuth", "symphony"),
pairs = NULL,
hvgs = NULL,
ref_name = NULL
)
Arguments
scseqs |
List of |
type |
One of |
pairs |
data.frame with columns |
Value
Integrated SingleCellExperiment object.
R Package Documentation
Browse R Packages
We want your feedback!
Note that we can't provide technical support on individual packages. You should contact the package authors for that.
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