load_scseq_subsets: Load subsets of scseqs for integration/subsetting

In hms-dbmi/drugseqr: GUI to Explore Single-Cell and Bulk RNA-Seq from Fastq to Pathways and Perturbations

Load subsets of scseqs for integration/subsetting

Description

Sets orig.ident to ident.

Usage

load_scseq_subsets(
  dataset_names,
  sc_dir,
  subset_metrics = NULL,
  is_include = NULL,
  ...
)

Arguments

dataset_names	Character vector of single cell analysis names to load.
sc_dir	The directory with single-cell datasets
ident	Either 'test' 'ctrl' for integration. The from dataset for subsetting.

Value

List of SingleCellExperiment objects.

hms-dbmi/drugseqr documentation built on Feb. 15, 2024, 10:38 p.m.