plotlyMDS: Plot MDS plotlys

In hms-dbmi/drugseqr: GUI to Explore Single-Cell and Bulk RNA-Seq from Fastq to Pathways and Perturbations

Plot MDS plotlys

Description

Plot MDS plotlys

Usage

plotlyMDS(
  scaling,
  scaling_adj = NULL,
  group_colors = c("#337ab7", "#e6194b"),
  adjusted = FALSE,
  title = "Sammon MDS plots"
)

Arguments

scaling	tibble with coordinate columns MDS1 and MDS2 calculated from expression data without correction for surrogate variables
scaling_adj	Optional. Same as scaling but using expression data adjusted for surrogate variables. If omitted, an MDS plot is created only for scaling.
group_colors	colors to use, one for each unique groups in scaling$Group.
title	Plot title.

Value

plotly object

hms-dbmi/drugseqr documentation built on Oct. 26, 2024, 6:13 p.m.