run_fastmnn: Run fastMNN integration
In hms-dbmi/drugseqr: GUI to Explore Single-Cell and Bulk RNA-Seq from Fastq to Pathways and Perturbations
run_fastmnn R Documentation
Run fastMNN integration
Description
Run fastMNN integration
Usage
run_fastmnn(logcounts, subset.row, scseqs)
Arguments
logcounts
dgCMatrix of logcounts.
subset.row
A vector specifying which features to use for correction.
scseqs
list of SingleCellExperiment objects to integrate.
Value
Integrated SingleCellExperiment with logcounts assay, corrected reducedDim, and batch annotation.
hms-dbmi/drugseqr documentation built on Oct. 26, 2024, 6:13 p.m.
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| run_fastmnn | R Documentation |
Run fastMNN integration
Description
Run fastMNN integration
Usage
run_fastmnn(logcounts, subset.row, scseqs)
Arguments
logcounts |
dgCMatrix of logcounts. |
subset.row |
A vector specifying which features to use for correction. |
scseqs |
list of |
Value
Integrated SingleCellExperiment with logcounts assay, corrected reducedDim, and batch annotation.
R Package Documentation
Browse R Packages
We want your feedback!
Note that we can't provide technical support on individual packages. You should contact the package authors for that.
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