run_harmony: Run harmony integration
In hms-dbmi/drugseqr: GUI to Explore Single-Cell and Bulk RNA-Seq from Fastq to Pathways and Perturbations
run_harmony R Documentation
Run harmony integration
Description
Run harmony integration
Usage
run_harmony(logcounts, subset_row, batch, pairs = NULL)
Arguments
logcounts
dgCMatrix of logcounts.
subset_row
Vector specifying the subset of features to use for dimensionality reduction.
This can be a character vector of row names, an integer vector of row indices or a logical vector.
pairs
Value
Integrated SingleCellExperiment with logcounts assay, corrected reducedDim, and batch annotation.
hms-dbmi/drugseqr documentation built on Feb. 15, 2024, 10:38 p.m.
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| run_harmony | R Documentation |
Run harmony integration
Description
Run harmony integration
Usage
run_harmony(logcounts, subset_row, batch, pairs = NULL)
Arguments
logcounts |
dgCMatrix of logcounts. |
subset_row |
Vector specifying the subset of features to use for dimensionality reduction. This can be a character vector of row names, an integer vector of row indices or a logical vector. |
pairs |
Value
Integrated SingleCellExperiment with logcounts assay, corrected reducedDim, and batch annotation.
R Package Documentation
Browse R Packages
We want your feedback!
Note that we can't provide technical support on individual packages. You should contact the package authors for that.
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