run_reduction: Run TSNE or UMAP
In hms-dbmi/drugseqr: GUI to Explore Single-Cell and Bulk RNA-Seq from Fastq to Pathways and Perturbations
run_reduction R Documentation
Run TSNE or UMAP
Description
Run TSNE or UMAP
Usage
run_reduction(sce, type = c("auto", "TSNE", "UMAP"), dimred = "PCA")
Arguments
sce
SingleCellExperiment
type
One of c('auto', 'TSNE', 'UMAP'). If 'auto' (default),
runs UMAP is more than 5000 cells, otherwise TSNE.
dimred
reducedDim to run TSNE or UMAP on
Value
sce with 'TSNE' or 'UMAP' reducedDim
hms-dbmi/drugseqr documentation built on Feb. 15, 2024, 10:38 p.m.
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| run_reduction | R Documentation |
Run TSNE or UMAP
Description
Run TSNE or UMAP
Usage
run_reduction(sce, type = c("auto", "TSNE", "UMAP"), dimred = "PCA")
Arguments
sce |
|
type |
One of |
dimred |
reducedDim to run TSNE or UMAP on |
Value
sce with 'TSNE' or 'UMAP' reducedDim
R Package Documentation
Browse R Packages
We want your feedback!
Note that we can't provide technical support on individual packages. You should contact the package authors for that.
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