run_scseq_qc: Run quality control for single-cell dataset
In hms-dbmi/drugseqr: GUI to Explore Single-Cell and Bulk RNA-Seq from Fastq to Pathways and Perturbations
run_scseq_qc R Documentation
Run quality control for single-cell dataset
Description
Run quality control for single-cell dataset
Usage
run_scseq_qc(
sce,
metrics = c("low_lib_size", "low_n_features", "high_subsets_mito_percent",
"low_subsets_ribo_percent", "high_doublet_score")
)
Arguments
sce
SingleCellExperiment.
metrics
Character vector of metrics to remove outliers for.
Value
sce with outliers removed.
hms-dbmi/drugseqr documentation built on Feb. 15, 2024, 10:38 p.m.
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| run_scseq_qc | R Documentation |
Run quality control for single-cell dataset
Description
Run quality control for single-cell dataset
Usage
run_scseq_qc(
sce,
metrics = c("low_lib_size", "low_n_features", "high_subsets_mito_percent",
"low_subsets_ribo_percent", "high_doublet_score")
)
Arguments
sce |
|
metrics |
Character vector of metrics to remove outliers for. |
Value
sce with outliers removed.
R Package Documentation
Browse R Packages
We want your feedback!
Note that we can't provide technical support on individual packages. You should contact the package authors for that.
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