scPage: Logic for Single Cell Tab

In hms-dbmi/drugseqr: GUI to Explore Single-Cell and Bulk RNA-Seq from Fastq to Pathways and Perturbations

Logic for Single Cell Tab

Description

Logic for Single Cell Tab

Usage

scPage(
  input,
  output,
  session,
  sc_dir,
  indices_dir,
  tx2gene_dir,
  gs_dir,
  is_mobile,
  add_sc,
  remove_sc,
  integrate_sc,
  export_sc
)

Arguments

input, output, session	standard shiny module boilerplate
sc_dir	sub folder of project_dir where single-cell data is stored
indices_dir	Path to directory containing kallisto indices and whitelists.
tx2gene_dir	Path to directory containing transcript to gene maps produced by load_tx2gene.
gs_dir	Path to directory where gene to Gene Ontology maps produced by get_genego are saved.
is_mobile	is the page being shown on a mobile device? If TRUE, then various styles are updated accordingly.
add_sc	reactive that is used to trigger the modal to import single-cell datasets.
remove_sc	reactive that is used to trigger the modal to delete single-cell datasets.
integrate_sc	reactive that is used to trigger the modal to integrate single-cell datasets.
export_sc	reactive that is used to trigger the modal to export single-cell datasets.

Value

Called with callModule to generate logic for single-cell tab.

hms-dbmi/drugseqr documentation built on Feb. 15, 2024, 10:38 p.m.