sort_query_table_clin: final sorting/filtering of query table

In hms-dbmi/drugseqr: GUI to Explore Single-Cell and Bulk RNA-Seq from Fastq to Pathways and Perturbations

final sorting/filtering of query table

Description

final sorting/filtering of query table

Usage

sort_query_table_clin(
  query_table_clin,
  sort_by,
  sort_abs,
  direction,
  drug_study,
  remove_html = FALSE
)

Arguments

query_table_clin	result of filter_clinical
sort_by	Metric to sort by. Either 'avg_cor' (default) or 'min_cor'.
sort_abs	Should results be sorted based on absolute correlation? Default is FALSE.
direction	Direction of correlation to sort results by. One of 'both', 'similar', or 'opposing' (default).
drug_study	Queried database giving rise to query_res. One of 'CMAP02','L1000 Genetic', or 'L1000 Drugs'.
remove_html	Should html columns be removed? For non-webapp usage.

Value

Final query table

hms-dbmi/drugseqr documentation built on Feb. 15, 2024, 10:38 p.m.