subset_saved_scseq: Subset SingleCellExperiment

In hms-dbmi/drugseqr: GUI to Explore Single-Cell and Bulk RNA-Seq from Fastq to Pathways and Perturbations

Subset SingleCellExperiment

Description

Subset SingleCellExperiment

Usage

subset_saved_scseq(
  sc_dir,
  founder,
  from_dataset,
  dataset_name,
  exclude_clusters = NULL,
  subset_metrics = NULL,
  is_integrated = FALSE,
  is_include = FALSE,
  progress = NULL,
  hvgs = NULL,
  ref_name = NULL,
  tx2gene_dir = NULL
)

Arguments

sc_dir	Directory with saved single-cell datasets.
founder	Name of original founding dataset (may be ancestor of from_dataset).
from_dataset	Name of parent dataset.
dataset_name	Name for new subset dataset.
exclude_clusters	Charactor vector of clusters for excluding cells.
subset_metrics	Character vector of metrics for excluding cells.
progress	Optional shiny progress object.

Value

TRUE is successful, otherwise FALSE

hms-dbmi/drugseqr documentation built on June 24, 2024, 7:03 a.m.