summarise_query_table: Summarise annotated query table

In hms-dbmi/drugseqr: GUI to Explore Single-Cell and Bulk RNA-Seq from Fastq to Pathways and Perturbations

Summarise annotated query table

Description

Summarise annotated query table

Usage

summarise_query_table(
  query_table_annot,
  is_genetic,
  cells,
  sort_abs,
  remove_html = FALSE,
  ntop = 1500
)

Arguments

query_table_annot	result of annot_query_res
is_genetic	Boolean indicating if the query results are from L1000 genetic perturbations.
cells	Character vector of cell types to include. Default (NULL) includes all cell types.
sort_abs	Should results be sorted based on absolute correlation? Default is FALSE.
remove_html	Should html columns be removed? For non-webapp usage.
ntop	Integer indicating the number of rows to keep after sorting by arrange_by.

Value

summarised query table

hms-dbmi/drugseqr documentation built on Feb. 15, 2024, 10:38 p.m.