View source: R/modules-drugs-utils.R
summarize_compound | R Documentation |
Takes a data.frame
with one row per signatures and summarizes to one row per compound.
summarize_compound(query_table, is_genetic = FALSE, ntop = 1500)
query_table |
|
is_genetic |
is |
ntop |
Integer indicating the number of rows to keep after sorting by |
Variables related to individual signatures (cell line, dose, duration, and sample number) are
pasted together and added as a list to 'title'
column. Query correlation values are also added as a list to
the 'Correlation'
column.
Clinical status is summarized by keeping the most advanced phase only (e.g. Launched > Phase 3). For all other variables,
all unique entries are paste together seperated by '|'
.
data.frame
of perturbation correlations and annotations summarized by perturbation.
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