Files in iaaka/visutils

QC, analyse and visualize visium

R/.ipynb_checkpoints/rna.leakage.toolkit-checkpoint.R R/.ipynb_checkpoints/visium.utilities-checkpoint.R R/general.purpuse.utilities.R R/merge.spots.R R/nmf.R R/rna.leakage.toolkit.R R/tissue.border.R R/tissue.in.depth.R R/visium.graphics.R R/visium.utilities.R README.md man/applyTransforms.Rd man/bandwidth.nrd.not0.Rd man/barplotWithText.Rd man/calcColSums.Rd man/calcDistance2SpotSet.Rd man/calcSpotDistance.Rd man/char2col.Rd man/col2hex.Rd man/compareSets.Rd man/cropVisiumImage.Rd man/defineJunction.Rd man/dotPlot.Rd man/enhanceImage.Rd man/findTissueBorder.Rd man/first2Upper.Rd man/getCenters.Rd man/getColoursByDistance.Rd man/getConsensus.Rd man/getLineWidth.Rd man/getMaxInxByFirstDD.Rd man/getMeanSpotColor.Rd man/getMeanSpotColor1.Rd man/getNMFNormFs.Rd man/getNMFcl.Rd man/getRotations.Rd man/getSilhouetteStat.Rd man/hist2D.Rd man/imageWithText.Rd man/isColors.Rd man/loadVisiumFrom10x.Rd man/log10p1.Rd man/makeDistFeatureSampleTable.Rd man/mergePNG2PFD.Rd man/mergeSpots.Rd man/my.make.unique.Rd man/myLoad10X_Spatial.Rd man/nmfGetBest.Rd man/num2col.Rd man/number2bin.Rd man/overlayColours.Rd man/overlayTwoColours.Rd man/plotArea.Rd man/plotColorAnn.Rd man/plotColorLegend.Rd man/plotColorLegend2.Rd man/plotConditionsProfiles.Rd man/plotFeatureProfiles.Rd man/plotLine.Rd man/plotNMFCons.Rd man/plotPanelLetter.Rd man/plotPointDensity.Rd man/plotTD.HM.Rd man/plotVisium.Rd man/plotVisiumHex.Rd man/plotVisiumImg.Rd man/plotVisiumMultyColours.Rd man/pointKde2d.Rd man/recycle.Rd man/renameClustsBySize.Rd man/rotateVisium.Rd man/scaleTo.Rd man/scaleVisiumImage.Rd man/splitSub.Rd man/symbols.pie.Rd man/testTDConditions.Rd man/trimQ.Rd man/weightedColourMeans.Rd test/test.R vignettes/Microenvironments.Rmd vignettes/Microenvironments.md vignettes/SpotMerge.Rmd vignettes/SpotMerge.md vignettes/TissueCarving.Rmd vignettes/TissueCarving.md vignettes/TissueInDepth.Rmd vignettes/TissueInDepth.md vignettes/Visualization.Rmd vignettes/Visualization.md