rot_plot_resistance: rot_plot_resistance plot rotation simulation resistance...

In ian-hastings/rotations: Simulating the Evolution of Insecticide Resistance under Rotations

Description

rot_plot_resistance plot rotation simulation resistance results

Usage

rot_plot_resistance(
  df_res2,
  plot_refuge = TRUE,
  mort_thresh = 0.9,
  freq_thresh = 0.5,
  mort_or_freq = "mort",
  logy = TRUE,
  add_gens_under50 = FALSE,
  df_resanother = NULL,
  lwd = 1.5,
  title = "auto",
  plot = TRUE,
  plot_mort = TRUE
)

Arguments

df_res2	dataframe of resistance results from run_rot()
plot_refuge	whether to plot refuge as well as intervention
mort_thresh	mortality threshold for switching insecticides, default 0.9, only used if mort_or_freq is mort
freq_thresh	resistance frequency threshold for switching insecticides, default 0.5, only used if mort_or_freq is freq
mort_or_freq	whether threshold for insecticide change is mortality 'mort' or resistance frequency 'freq'
logy	whether to use log scale for y axis
add_gens_under50	whether to add a label of num generations under 50percent resistance
df_resanother	exploratory option to plot results of another scenario on the same graph
lwd	line thickness for resistance curves
title	optional title for plot, NULL for no title, 'auto' for auto generated title
plot	whether to plot results
plot_mort	whether to add mortality to plots

Value

ggplot object

Examples

df_res2 <- run_rot()
rot_plot_resistance(df_res2)

ian-hastings/rotations documentation built on Dec. 14, 2020, 11:42 p.m.