raf_get: get selected Resistance Allele Frequencies from array

In ian-hastings/rotations: Simulating the Evolution of Insecticide Resistance under Rotations

Description

get selected Resistance Allele Frequencies from array

Usage

raf_get(
  RAF,
  insecticide = TRUE,
  sex = TRUE,
  site = TRUE,
  gen = TRUE,
  asdf = FALSE
)

Arguments

RAF	array of resistance allele frequencies, either [insecticide, sex, site, gen] or without generationd dimension
insecticide	which insecticide, by number, default to all (TRUE), vector e.g. c(1,2)
sex	'm' or 'f', default to all (TRUE)
site	'intervention' or 'refugia', default to all (TRUE)
gen	which generation, single or vector e.g. c(1:10), default to all (TRUE)
asdf	to return as dataframe instead of array default FALSE

Value

array or dataframe of resistance frequencies

Examples

#frequencies different for each insecticide
RAF <- set_start_freqs(max_gen = 2, freqs=c(0.1,0.01,0.001))

raf_get(RAF, sex='f')
raf_get(RAF, site='intervention')
raf_get(RAF, gen=1, asdf=TRUE)

ian-hastings/rotations documentation built on Dec. 14, 2020, 11:42 p.m.