set_start_freqs: set_start_freqs allows starting allele frequencies to be set

In ian-hastings/rotations: Simulating the Evolution of Insecticide Resistance under Rotations

Description

set_start_freqs allows starting allele frequencies to be set

Usage

set_start_freqs(
  n_insecticides = NULL,
  max_gen = 200,
  freqs = 0.001,
  coverage = 0.5
)

Arguments

n_insecticides	number of insecticides, optional can just be specified by number of items in vector expo
max_gen	maximum number of mosquito generations to run the simulation
freqs	starting allele frequencies either one per insecticide or same for all in this version same for m,f,intervention & refuge
coverage	proportion of mosquitoes that are covered by the intervention, if coverage==1 no refuge

Value

array of allele frequencies with just first record filled

Examples

#frequencies the same for all insecticides
RAF <- set_start_freqs(n=3, freqs=0.001)
RAF[,,,1] # to view generation 1
#frequencies different for each insecticide
RAF <- set_start_freqs(n=3, freqs=c(0.1,0.01,0.001))
RAF[,,,1] # to view generation 1
#testing mutliplying frequency arrays
RAF <- set_start_freqs(max_gen = 1, freqs=c(0.1,0.01,0.001))
RAF2 <- set_start_freqs(max_gen = 1, freqs=c(1,2,3))
RAF*RAF2

#allowing array to be viewed differently
as.data.frame(RAF)

ian-hastings/rotations documentation built on Dec. 14, 2020, 11:42 p.m.