Files in ian-hastings/rotations
Simulating the Evolution of Insecticide Resistance under Rotations
.Rbuildignore
.gitignore
DESCRIPTION
NAMESPACE
R/array_named.r
R/calc_max_gens.r
R/cumulat_mortality.r
R/fitness_single_locus.r
R/freq_fitness_simple.r
R/genotype_freq.r
R/gens_under_thresh.r
R/get_one_in.r
R/insecticide_check.r
R/insecticide_switch.r
R/migration_test.r
R/mort_by_genotype.R
R/mort_from_resist.r
R/mutn_seln_bal.r
R/plot_mort_thresh.r
R/raf_get.r
R/read_in_expt.r
R/rot_migrate.r
R/rot_plots.r
R/rotations.r
R/run_rot.r
R/set_exposure_rot.r
R/set_run_inputs.r
R/set_start_freqs.r
README.md
data-raw/Rotations-simulation.R
data-raw/rotations_doMPI_jam1.R
data-raw/rotations_doParallel_jam1.R
inst/documents/combined_SI.log
inst/documents/combined_SI.rmd
inst/documents/combined_SI.tex
inst/documents/paper3/biomed-central.csl
inst/documents/paper3/library.bib
inst/documents/paper3/pap3_rot_analyses.Rmd
inst/documents/paper3/pap3figs/Fig1-1.tiff
inst/documents/paper3/pap3figs/Fig10-1.tiff
inst/documents/paper3/pap3figs/Fig2-1.tiff
inst/documents/paper3/pap3figs/Fig3-1.tiff
inst/documents/paper3/pap3figs/Fig4-1.tiff
inst/documents/paper3/pap3figs/Fig5-1.tiff
inst/documents/paper3/pap3figs/Fig5xtra-1.tiff
inst/documents/paper3/pap3figs/Fig5xtra_cost_dispersal-1.tiff
inst/documents/paper3/pap3figs/Fig6-1.tiff
inst/documents/paper3/pap3figs/Fig7-1.tiff
inst/documents/paper3/pap3figs/Fig8-1.tiff
inst/documents/paper3/pap3figs/Fig8.2-1.tiff
inst/documents/paper3/pap3figs/Fig9-1.tiff
inst/documents/paper3/pap3figs/FigX-1.tiff
inst/documents/paper3/pap3figs/FigX8-1.tiff
inst/documents/paper3/paper3_rotations.Rmd
inst/documents/paper3/paper3_rotations.docx
inst/documents/paper3/paper3_rotations20180501.docx
inst/documents/paper3/paper3_rotations20180514.docx
inst/documents/paper3/recent_resist_literature.Rmd
inst/documents/paper3/recent_resist_literature.docx
inst/documents/paper3/rotations_model_progress_lstm_201810.docx
inst/documents/paper_figs_rotations201911.Rmd
inst/documents/paper_figs_rotations201911.docx
inst/documents/paper_figs_rotations202010.Rmd
inst/documents/paper_figs_rotations202010.docx
inst/documents/phaps-rotations-better.Rmd
inst/documents/rot_plot.png
inst/documents/rot_plot2.png
inst/documents/rotation_runs2019.Rmd
inst/documents/rotation_runs2020_sam.rmd
inst/documents/rotations1.Rmd
inst/documents/rotations1.pdf
inst/documents/rotations_notes.Rmd
inst/documents/rotations_story.Rmd
inst/documents/rotations_story.pdf
inst/documents/rotfigs/fig-si-1-abs-diff-rot-seq-1.tiff
inst/documents/rotfigs/fig2-pcent-diff-rot-seq-1.tiff
inst/documents/rotfigs/fig3-mort-which-best-meanmort-1.tiff
inst/documents/rotfigs/fig4-examp-run-A1-1.tiff
inst/documents/rotfigs/fig5-examp-run-A2-1.tiff
inst/documents/rotfigs/fig6-examp-run-C2-1.tiff
inst/documents/rotfigs/fig7-examp-run-A3-1.tiff
inst/documents/rotfigs/fig8-examp-run-B2-1.tiff
inst/documents/rotfigs/fig9-which-best-each-gens-rot-1.tiff
inst/documents/rotfigs/fig9seq-which-best-each-gens-seq-1.tiff
inst/documents/rotfigs/old/fig-si-1-abs-diff-rot-seq-1.tiff
inst/documents/rotfigs/old/fig2-examp-run-A1-1.tiff
inst/documents/rotfigs/old/fig3-examp-run-A2-1.tiff
inst/documents/rotfigs/old/fig4-examp-run-C2-1.tiff
inst/documents/rotfigs/old/fig5-examp-run-A3-1.tiff
inst/documents/rotfigs/old/fig6-examp-run-B2-1.tiff
inst/documents/rotfigs/old/figx1-pcent-diff-rot-seq-1.tiff
inst/documents/rotfigs/old/figx2-which-best-each-gens-rot-1.tiff
inst/documents/rotfigs/old/figx3-which-best-each-gens-seq-1.tiff
inst/documents/rotfigs/old/figxgens_rot_v_mort_rot-1.tiff
inst/documents/rotfigs/old/figxmort-rot-1.tiff
inst/documents/rotfigs/old/figxmort-rot-minus-seq-1.tiff
inst/documents/rotfigs/old/figxmort-v-gens-1.tiff
inst/documents/rotfigs/old/figxmort-which-best-meanmort-1.tiff
inst/documents/rotfigs/old/figxmort_rot_v_start_freqs-1.tiff
inst/documents/rotfigs/old/figxx-PRCC-1.tiff
inst/documents/sensi_an_param_call_list.Rmd
inst/documents/sensi_an_rotations1.Rmd
inst/documents/sensi_an_rotations_trimmed_4_jim.r
inst/documents/test-plot-resize.Rmd
inst/documents/test-plot-resize.docx
inst/documents/test-resize1-1.tiff
inst/documents/test-resize2-1.tiff
inst/extdata/_in_expt_rotations_default.csv
inst/extdata/_in_expt_rotations_default_one_scenario.csv
inst/extdata/expt-A2-freq-insame-costs-nodisp.csv
inst/extdata/rotations-paper-inputs-201910.xlsx
inst/shiny/resistrot/about.md
inst/shiny/resistrot/rsconnect/shinyapps.io/andysouth/resistrot.dcf
inst/shiny/resistrot/server.r
inst/shiny/resistrot/ui.r
inst/shiny/resistrot/www/bootstrap_simplex.css
inst/shiny/rotresist1/about.md
inst/shiny/rotresist1/server.r
inst/shiny/rotresist1/ui.r
inst/shiny/rotresist1/www/bootstrap_simplex.css
man/array_named.Rd
man/fitness_single_locus.Rd
man/fitness_single_locus_test.Rd
man/insecticide_check.Rd
man/insecticide_switch.Rd
man/migration_test.Rd
man/raf_get.Rd
man/rot_migrate.Rd
man/rot_plot_resistance.Rd
man/rotations.Rd
man/run_rot.Rd
man/set_exposure_rot.Rd
man/set_exposure_rot_test.Rd
man/set_start_freqs.Rd
man/set_start_freqs_test.Rd
para1results.csv
rot.csv
rotations.Rproj
seq.csv
tests/testthat.R
tests/testthat/test_rot_migrate.r
