Hc.cutoff.fdr: Estimate the Hc.cutoff for the required FDR
In ichcha-m/cophescan: Adaptation of the Coloc Method for PheWAS
View source: R/cophe_hyp_predict.R
Hc.cutoff.fdr R Documentation
Estimate the Hc.cutoff for the required FDR
Description
Estimate the Hc.cutoff for the required FDR
Usage
Hc.cutoff.fdr(ppHc, fdr = 0.05, return_plot = TRUE)
Arguments
ppHc
a vector containing the PP.Hc (the posterior probability of causal association) of all tests
fdr
FDR default: 0.05
return_plot
default: TRUE, plot the fdr estimated at the different Hc.cutoff
Value
the Hc.cutoff value for the specified FDR, if return_plot is True returns a plot showing the FDR calculated at different Hc thresholds
ichcha-m/cophescan documentation built on June 16, 2024, 1:39 a.m.
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View source: R/cophe_hyp_predict.R
| Hc.cutoff.fdr | R Documentation |
Estimate the Hc.cutoff for the required FDR
Description
Estimate the Hc.cutoff for the required FDR
Usage
Hc.cutoff.fdr(ppHc, fdr = 0.05, return_plot = TRUE)
Arguments
ppHc |
a vector containing the PP.Hc (the posterior probability of causal association) of all tests |
fdr |
FDR default: 0.05 |
return_plot |
default: TRUE, plot the fdr estimated at the different Hc.cutoff |
Value
the Hc.cutoff value for the specified FDR, if return_plot is True returns a plot showing the FDR calculated at different Hc thresholds
R Package Documentation
Browse R Packages
We want your feedback!
Note that we can't provide technical support on individual packages. You should contact the package authors for that.
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