cophe.single.lbf: cophe.single.lbf

In ichcha-m/cophescan: Adaptation of the Coloc Method for PheWAS

cophe.single.lbf

Description

Calculate log bayes factors for each hypothesis (Single causal variant assumption)

Usage

cophe.single.lbf(dataset, querysnpid, querytrait, MAF = NULL)

Arguments

dataset	a list with specifically named elements defining the query trait dataset to be analysed.
querysnpid	Id of the query variant, (id in dataset$snp)
querytrait	Query trait name
MAF	Minor allele frequency vector

Value

data frame with log bayes factors for Hn and Ha hypotheses

Author(s)

Ichcha Manipur

See Also

cophe.single

Examples

library(cophescan)
data(cophe_multi_trait_data)
query_trait_1 <- cophe_multi_trait_data$summ_stat[['Trait_1']]
querysnpid <- cophe_multi_trait_data$querysnpid
res.single.lbf <- cophe.single.lbf(query_trait_1, querysnpid = querysnpid, querytrait='Trait_1')
res.single.lbf

ichcha-m/cophescan documentation built on June 16, 2024, 1:39 a.m.