plot_trait_manhat: Plot region Manhattan for a trait highlighting the queried...
In ichcha-m/cophescan: Adaptation of the Coloc Method for PheWAS
plot_trait_manhat R Documentation
Plot region Manhattan for a trait highlighting the queried variant
Description
Plot region Manhattan for a trait highlighting the queried variant
Usage
plot_trait_manhat(trait.dat, querysnpid, alt.snpid = NULL)
Arguments
trait.dat
dataset used as input for running cophescan
querysnpid
the id of the causal variant as present in trait.dat$snp, plotted in red
alt.snpid
the id of the other variants as a vector to be plotted, plotted in blue
Value
regional manhattan plot
ichcha-m/cophescan documentation built on June 16, 2024, 1:39 a.m.
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| plot_trait_manhat | R Documentation |
Plot region Manhattan for a trait highlighting the queried variant
Description
Plot region Manhattan for a trait highlighting the queried variant
Usage
plot_trait_manhat(trait.dat, querysnpid, alt.snpid = NULL)
Arguments
trait.dat |
dataset used as input for running cophescan |
querysnpid |
the id of the causal variant as present in trait.dat$snp, plotted in red |
alt.snpid |
the id of the other variants as a vector to be plotted, plotted in blue |
Value
regional manhattan plot
R Package Documentation
Browse R Packages
We want your feedback!
Note that we can't provide technical support on individual packages. You should contact the package authors for that.
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