cophe_heatmap: Heatmap of multi-trait cophescan results

In ichcha-m/cophescan: Adaptation of the Coloc Method for PheWAS

Heatmap of multi-trait cophescan results

Description

Heatmap of multi-trait cophescan results

Usage

cophe_heatmap(
  multi.dat,
  querysnpid,
  query_trait_names,
  thresh_Hc = 0.5,
  thresh_Ha = 0.5,
  ...
)

Arguments

multi.dat	multi trait cophescan results returned from cophe.multitrait or formatted in the same way with multitrait.simplify
querysnpid	query variant
query_trait_names	names of phenotypes corresponding to the multi.dat results
thresh_Hc	Hc threshold to be displayed
thresh_Ha	Ha threshold to be displayed
...	additional arguments to be passed to pheatmap

Value

heatmap of posterior probabilities of the phentypes above the set threshold

ichcha-m/cophescan documentation built on June 16, 2024, 1:39 a.m.