combine.bf: combine.bf

In ichcha-m/cophescan: Adaptation of the Coloc Method for PheWAS

combine.bf

Description

Calculate posterior probabilities for all the configurations

Usage

combine.bf(lBF_df, pn, pa, pc)

Arguments

lBF_df	dataframe with log bayes factors of hypothesis Ha and Hn: column names should be lBF.Ha and lBF.Hc
pn	prior probability that none of the SNPs/variants in the region are associated with the query trait
pa	prior probability that a non-query variant is causally associated with the query trait
pc	prior probability that the query variant is causally associated with the query trait

Value

named numeric vector of posterior probabilities and bayes factors

Author(s)

Ichcha Manipur

ichcha-m/cophescan documentation built on June 16, 2024, 1:39 a.m.