pseudobulk_one_vs_all | R Documentation |
Pseudobulk one versus all
pseudobulk_one_vs_all( dge_formula, counts_df, meta_data, contrast_var, vals_test, collapse_background, verbose )
dge_formula |
differential gene expression formula for DESeq2 |
counts_df |
counts matrix |
meta_data |
data.frame of cell metadata |
contrast_var |
cell metadata column to use for differential gene expression |
vals_test |
cell metadata columns |
collapse_background |
collapse background counts according to 'contrast_var' |
verbose |
verbose |
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