pseudobulk_one_vs_all: Pseudobulk one versus all

View source: R/pseudobulk.R

pseudobulk_one_vs_allR Documentation

Pseudobulk one versus all

Description

Pseudobulk one versus all

Usage

pseudobulk_one_vs_all(
  dge_formula,
  counts_df,
  meta_data,
  contrast_var,
  vals_test,
  collapse_background,
  verbose
)

Arguments

dge_formula

differential gene expression formula for DESeq2

counts_df

counts matrix

meta_data

data.frame of cell metadata

contrast_var

cell metadata column to use for differential gene expression

vals_test

cell metadata columns

collapse_background

collapse background counts according to 'contrast_var'

verbose

verbose


immunogenomics/presto documentation built on Nov. 12, 2022, 5:13 p.m.