pseudobulk_one_vs_all: Pseudobulk one versus all

In immunogenomics/presto: Fast Functions for Differential Expression using Wilcox and AUC

Pseudobulk one versus all

Description

Pseudobulk one versus all

Usage

pseudobulk_one_vs_all(
  dge_formula,
  counts_df,
  meta_data,
  contrast_var,
  vals_test,
  collapse_background,
  verbose
)

Arguments

dge_formula	differential gene expression formula for DESeq2
counts_df	counts matrix
meta_data	data.frame of cell metadata
contrast_var	cell metadata column to use for differential gene expression
vals_test	cell metadata columns
collapse_background	collapse background counts according to 'contrast_var'
verbose	verbose

immunogenomics/presto documentation built on Nov. 12, 2022, 5:13 p.m.