pseudobulk_pairwise | R Documentation |
Pseudobulk pairwise
pseudobulk_pairwise( dge_formula, counts_df, meta_data, contrast_var, vals_test, verbose, min_counts_per_sample, present_in_min_samples )
dge_formula |
differential gene expression formula for DESeq2 |
counts_df |
counts matrix |
meta_data |
data.frame of cell metadata |
contrast_var |
cell metadata column to use for differential gene expression |
vals_test |
cell metadata columns |
verbose |
verbose |
min_counts_per_sample |
minimum counts per sample to include in differential gene expression |
present_in_min_samples |
minimum samples with gene counts to include in differential gene expression |
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