pseudobulk_pairwise: Pseudobulk pairwise

View source: R/pseudobulk.R

pseudobulk_pairwiseR Documentation

Pseudobulk pairwise

Description

Pseudobulk pairwise

Usage

pseudobulk_pairwise(
  dge_formula,
  counts_df,
  meta_data,
  contrast_var,
  vals_test,
  verbose,
  min_counts_per_sample,
  present_in_min_samples
)

Arguments

dge_formula

differential gene expression formula for DESeq2

counts_df

counts matrix

meta_data

data.frame of cell metadata

contrast_var

cell metadata column to use for differential gene expression

vals_test

cell metadata columns

verbose

verbose

min_counts_per_sample

minimum counts per sample to include in differential gene expression

present_in_min_samples

minimum samples with gene counts to include in differential gene expression


immunogenomics/presto documentation built on Nov. 12, 2022, 5:13 p.m.