pseudobulk_pairwise: Pseudobulk pairwise

In immunogenomics/presto: Fast Functions for Differential Expression using Wilcox and AUC

Pseudobulk pairwise

Description

Pseudobulk pairwise

Usage

pseudobulk_pairwise(
  dge_formula,
  counts_df,
  meta_data,
  contrast_var,
  vals_test,
  verbose,
  min_counts_per_sample,
  present_in_min_samples
)

Arguments

dge_formula	differential gene expression formula for DESeq2
counts_df	counts matrix
meta_data	data.frame of cell metadata
contrast_var	cell metadata column to use for differential gene expression
vals_test	cell metadata columns
verbose	verbose
min_counts_per_sample	minimum counts per sample to include in differential gene expression
present_in_min_samples	minimum samples with gene counts to include in differential gene expression

immunogenomics/presto documentation built on Nov. 12, 2022, 5:13 p.m.