pseudobulk_within: Pseudobulk within

In immunogenomics/presto: Fast Functions for Differential Expression using Wilcox and AUC

Pseudobulk within

Description

Pseudobulk within

Usage

pseudobulk_within(
  dge_formula,
  counts_df,
  meta_data,
  split_var,
  vals_test,
  verbose,
  min_counts_per_sample,
  present_in_min_samples
)

Arguments

dge_formula	differential gene expression formula for DESeq2
counts_df	counts matrix
meta_data	data.frame of cell metadata
split_var	-
vals_test	cell metadata columns
verbose	verbose
min_counts_per_sample	minimum counts per sample to include in differential gene expression
present_in_min_samples	minimum samples with gene counts to include in differential gene expression

immunogenomics/presto documentation built on Nov. 12, 2022, 5:13 p.m.