Files in immunogenomics/presto

Fast Functions for Differential Expression using Wilcox and AUC

.Rbuildignore

.github/workflows/R-CMD-check.yaml

.gitignore

CRAN-RELEASE

DESCRIPTION

NAMESPACE

NEWS.md R/RcppExports.R R/data.R R/presto-package.R R/pseudobulk.R R/utils.R R/wilcoxauc.R README.md cran-comments.md

data/exprs.rda

data/object_sce.rda

data/object_seurat.rda

data/y.rda

docs/.nojekyll

docs/404.html

docs/articles/getting-started.html

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docs/pkgdown.css

docs/pkgdown.js

docs/pkgdown.yml

docs/reference/Rplot001.png

docs/reference/collapse_counts.html

docs/reference/compute_hash.html

docs/reference/exprs.html

docs/reference/index.html

docs/reference/nnzeroGroups.html

docs/reference/object_sce.html

docs/reference/object_seurat.html

docs/reference/pipe.html

docs/reference/presto.html

docs/reference/pseudobulk_deseq2.html

docs/reference/pseudobulk_one_vs_all.html

docs/reference/pseudobulk_pairwise.html

docs/reference/pseudobulk_within.html

docs/reference/rank_matrix.html

docs/reference/sumGroups.html

docs/reference/summarize_dge_pairs.html

docs/reference/top_markers.html

docs/reference/top_markers_dds.html

docs/reference/wilcoxauc.html

docs/reference/y.html

docs/sitemap.xml

man/collapse_counts.Rd man/compute_hash.Rd man/exprs.Rd man/nnzeroGroups.Rd man/object_sce.Rd man/object_seurat.Rd man/pipe.Rd man/presto.Rd man/pseudobulk_deseq2.Rd man/pseudobulk_one_vs_all.Rd man/pseudobulk_pairwise.Rd man/pseudobulk_within.Rd man/rank_matrix.Rd man/sumGroups.Rd man/summarize_dge_pairs.Rd man/top_markers.Rd man/top_markers_dds.Rd man/wilcoxauc.Rd man/y.Rd

src/Makevars

src/Makevars.win

src/RcppExports.cpp

src/fast_wilcox.cpp

tests/testthat.R tests/testthat/test_correctness.R tests/testthat/test_datatypes.R vignettes/getting-started.Rmd

vignettes/pseudobulk.ipynb

immunogenomics/presto documentation built on March 26, 2024, 8:18 a.m.