top_markers_dds: Get top n markers from pseudobulk DESeq2
In immunogenomics/presto: Fast Functions for Differential Expression using Wilcox and AUC
top_markers_dds R Documentation
Get top n markers from pseudobulk DESeq2
Description
Useful summary of the most distinguishing features in each group.
Usage
top_markers_dds(res, n = 10, pval_max = 1, padj_max = 1, lfc_min = 1)
Arguments
res
table returned by pseudobulk_deseq2() function.
n
number of markers to find for each.
pval_max
filter features with pval > pval_max.
padj_max
filter features with padj > padj_max.
lfc_min
filter features with log2FoldChange < lfc_min
@return table with the top n markers for each cluster.
immunogenomics/presto documentation built on March 26, 2024, 8:18 a.m.
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| top_markers_dds | R Documentation |
Get top n markers from pseudobulk DESeq2
Description
Useful summary of the most distinguishing features in each group.
Usage
top_markers_dds(res, n = 10, pval_max = 1, padj_max = 1, lfc_min = 1)
Arguments
res |
table returned by pseudobulk_deseq2() function. |
n |
number of markers to find for each. |
pval_max |
filter features with pval > pval_max. |
padj_max |
filter features with padj > padj_max. |
lfc_min |
filter features with log2FoldChange < lfc_min @return table with the top n markers for each cluster. |
R Package Documentation
Browse R Packages
We want your feedback!
Note that we can't provide technical support on individual packages. You should contact the package authors for that.
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