Man pages for isglobal-brge/CNVassoc
Association analysis of CNVs and imputed SNPs incorporating uncertainty
| A112 | Copy Number Variant intensity data (from CNVtools) |
| cnv | CNV object |
| CNVassoc | Association analysis between a CNV and phenotype |
| CNVassoc-internal | Internal CNVassoc functions |
| CNVtest | Testing association between a CNV and phenotype |
| dataMLPA | MLPA data |
| fastCNVassoc | Fast association analysis between a CNV or imputed SNPs and... |
| fastCNVinter | Fast epistasis (pairwise interaction) analysis between two... |
| getProbs | Get posterior probabilities from an object of class 'cnv' or... |
| getProbsRegions | Get posterior probabilities for blocks/regions |
| getPvalBH | Corrected p values using Benjamini & Hochberg approach |
| getQualityScore | Computes a quality score for a CNV fit |
| multiCNVassoc | Association between several CNVs and disease |
| NeveCalled | Breast Cancer aCGH data with CGHcall |
| NeveData | Breast Cancer aCGH data |
| NeveRegions | Breast Cancer aCGH data with CGHcall |
| plotSignal | plots the intensities of a CNV univariate signal data |
| simCNVdataBinary | Simulation of CNV and discrete traits |
| simCNVdataCaseCon | Simulation of CNV in a case-control study design |
| simCNVdataNorm | Simulation of CNV and quantitative traits |
| simCNVdataPois | Simulate Poisson data |
| simCNVdataWeibull | Simulate of CNV and a right censored Weibull distributed... |
| SNPTEST | Case-control data with SNPTEST format |
