getProbsRegions: Get posterior probabilities for blocks/regions

In isglobal-brge/CNVassoc: Association analysis of CNVs and imputed SNPs incorporating uncertainty

Description

See vignette for further details.

Usage

getProbsRegions(probs,regions,intensities,nclass=3)

Arguments

probs	probabilities from CGH calling algorithms
regions	probs that define a segment
intensities	mean probe intensities for each region
nclass	See 'nclass' argument of function CGHcall

Value

Llist of matrices, one for aech region, containing the probabilities of copy number sstatus.

Note

See vignette for more information.

Examples

require(CGHregions)
data(NeveData)
intensities <- NeveData$data
pheno <- NeveData$pheno
data(NeveCalled)
probs <- getProbs(NeveCalled)
data(NeveRegions)
probsRegions <- getProbsRegions(probs, NeveRegions, intensities)
str(probsRegions)

isglobal-brge/CNVassoc documentation built on May 30, 2019, 9:48 p.m.