NeveCalled: Breast Cancer aCGH data with CGHcall

In isglobal-brge/CNVassoc: Association analysis of CNVs and imputed SNPs incorporating uncertainty

Description

Breast cancer aCGH data called with CGHcall with default settings, containing 2621 features and 50 samples

Usage

data(NeveData)

Format

An object of class CGHcall

Value

A list of two components: data frame with 54 variables and 2621 rows with the genotype data, and a vector containing the phenotype data.

Source

Neve RM, Chin K, Fridlyand J et al. A collection of breast cancer cell lines for the study of functionally distinct cancer subtypes. Cancer Cell, 10:515-527, 2006. Gonzalez JR, Subirana I, Escaramis G, Peraza S, Caceres A, Estivill X and Armengol L. Accounting for uncertainty when assessing association between copy number and disease: a latent class model. BMC Bioinformatics, 2009;10:172.

isglobal-brge/CNVassoc documentation built on May 30, 2019, 9:48 p.m.