SNPTEST: Case-control data with SNPTEST format

In isglobal-brge/CNVassoc: Association analysis of CNVs and imputed SNPs incorporating uncertainty

Description

Case-control data for 200 individuals (100 cases and 100 controls) and 50 SNPs using SNPTEST format (e.g. probabilities of AA, AB and BB genotypes)

Usage

data(SNPTEST)

Format

Two objects: cases and controls. Each object is a matrix with 100 rows and 1505 columns. Column 1-5 correspond to annotation. Files 6-1505 correspond to the probabilities of being AA, AB or BB for 500 SNPs

Value

Two data.frames with cases and controls. Each data.frame consists of 50 rows (individuals, and 1505 columns with imputed probabilities, and SNP info in the first five columns).

Source

https://mathgen.stats.ox.ac.uk/genetics_software/snptest/snptest.html

Examples

data(SNPTEST)
cases[1:10, 1:10]
controls[1:10, 1:10]

isglobal-brge/CNVassoc documentation built on May 30, 2019, 9:48 p.m.