Files in isglobal-brge/CNVassoc

Association analysis of CNVs and imputed SNPs incorporating uncertainty

.Rbuildignore

.Rinstignore

.gitignore

CNVassoc.Rproj

CNVassoc_vignette.html

DESCRIPTION

NAMESPACE

NEWS

R/CNVassoc.R R/CNVtest.R R/EMWeibull.R R/EMlogistic.R R/EMmixt.R R/EMnorm.R R/EMpoisson.R R/NRWeibull.R R/NRlogistic.R R/NRnorm.R R/NRpoisson.R R/anova.CNVassoc.R R/assocCNV.i.R R/checkCNV.R R/classCNV.R R/cnv.R R/cnvBatches.R R/cnvDefault.R R/fastCNVassoc.R R/fastCNVinter.R R/firstlib.R R/getProbs.R R/getProbs.cghCall.R R/getProbs.cnv.R R/getProbsRegions.R R/getProbsRegions.i.R R/getPvalBH.R R/getQualityScore.R R/getQualityScore.cnv.R R/getQualityScore.default.R R/hessianLinear.R R/hessianLogistic.R R/hessianPoisson.R R/hessianWeibull.R R/ifelsem.R R/is.cnv.R R/is.quantitative.R R/linear.fit.R R/logLik.CNVassoc.R R/logLik.survreg.R R/logLike.logistic.R R/logLike.norm.R R/logLike.poisson.R R/logLike.weibull.R R/logistic.fit.R R/matrix2vector.R R/mix.R R/mixture.R R/multiCNVassoc.R R/plapply.R R/plot.cnv.R R/plot.cnv.intensities.R R/plot.cnv.probabilities.R R/plotSignal.R R/poisson.fit.R R/print.CNVassoc.R R/print.CNVtest.R R/print.QualityScore.R R/print.anova.CNVassoc.R R/print.cnv.R R/print.summary.CNVassoc.R R/simCNVdataBinary.R R/simCNVdataCaseCon.R R/simCNVdataNorm.R R/simCNVdataPois.R R/simCNVdataWeibull.R R/simNormMixt.R R/subset.cnv.R R/summary.CNVassoc.R R/translate.r R/vector2matrix.R R/weibull.fit.R R/z[.cnv.R README.Rmd README.md

README_files/figure-markdown_github/unnamed-chunk-5-1.png

data/A112.rda

data/NeveCalled.rda

data/NeveData.rda

data/NeveRegions.rda

data/SNPTEST.rda

data/dataMLPA.rda

data/datalist

inst/exdata/SNPTEST.probs

inst/exdata/SNPTESToriginal.probs

inst/exdata/read_SNPTEST.R man/A112.Rd man/CNVassoc-internal.Rd man/CNVassoc.Rd man/CNVtest.Rd man/NeveCalled.Rd man/NeveData.Rd man/NeveRegions.Rd man/SNPTEST.Rd man/cnv.Rd man/dataMLPA.Rd man/fastCNVassoc.Rd man/fastCNVinter.Rd man/getProbs.Rd man/getProbsRegions.Rd man/getPvalBH.Rd man/getQualityScore.Rd man/multiCNVassoc.Rd man/plotSignal.Rd man/simCNVdataBinary.Rd man/simCNVdataCaseCon.Rd man/simCNVdataNorm.Rd man/simCNVdataPois.Rd man/simCNVdataWeibull.Rd replace_4blanks.R

src/CNVassoc.dll

src/CNVassoc.h

src/Makevars

src/NRinterlogistic.c

src/NRinterlogistic.o

src/NRinterlogisticcov.c

src/NRinterlogisticcov.o

src/NRinterweibull.c

src/NRinterweibull.o

src/NRinterweibullcov.c

src/NRinterweibullcov.o

src/NRlogistic.c

src/NRlogistic.o

src/NRlogisticcov.c

src/NRlogisticcov.o

src/NRweibull.c

src/NRweibull.o

src/NRweibullcov.c

src/NRweibullcov.o

src/dqrls.f

src/dqrls.o

src/init.c

src/init.o

src/loglikinterlogistic.c

src/loglikinterlogistic.o

src/loglikinterlogisticcov.c

src/loglikinterlogisticcov.o

src/loglikinterweibull.c

src/loglikinterweibull.o

src/loglikinterweibullcov.c

src/loglikinterweibullcov.o

src/logliklogistic.c

src/logliklogistic.o

src/logliklogisticcov.c

src/logliklogisticcov.o

src/loglikweibull.c

src/loglikweibull.o

src/loglikweibullcov.c

src/loglikweibullcov.o

src/maxC.c

src/maxC.o

src/outerC.c

src/outerC.o

src/registerDynamicSymbol.c

src/registerDynamicSymbol.o

src/sampleC.c

src/sampleC.o

src/simcensrespC.c

src/simcensrespC.o

tests/testthat.R tests/testthat/test-cnv.R vignettes/CNVassoc_vignette.Rmd

vignettes/CNVassoc_vignette.Rnw

vignettes/CNVassoc_vignette.bib

vignettes/fig1.jpg

isglobal-brge/CNVassoc documentation built on May 30, 2019, 9:48 p.m.