getProbs: Get posterior probabilities from an object of class 'cnv' or...

In isglobal-brge/CNVassoc: Association analysis of CNVs and imputed SNPs incorporating uncertainty

Description

This function creates a list where each component correspond to a given probe. Any component contains the posterior probabilities obtained from CGHcall algorithm.

Usage

getProbs(x)

## S3 method for class 'cnv'
getProbs(x)

Arguments

x	an object of class 'CGHcall' or 'cnv'

Value

A list where each component correspond to a given probe. Any component contains the posterior probabilities obtained from CGHcall algorithm

Note

See vignette for an example.

Author(s)

This function was created using a script kindly provided by Mark van de Wiel

Examples

data(dataMLPA)
CNV <- cnv(x = dataMLPA$Gene2, threshold.0 = 0.01, mix.method = "mixdist")
probs <- getProbs(CNV)
head(probs)

isglobal-brge/CNVassoc documentation built on May 30, 2019, 9:48 p.m.