tests/testthat/test_data.R

In jackgisby/packFinder: de novo Annotation of Pack-TYPE Transposable Elements

context("data")

dir.create("tempTestOutput")
data("arabidopsisThalianaRefseq")
data("packMatches")

test_that("length of datasets is as expected", {
    expect_equal(length(arabidopsisThalianaRefseq), 1)
    expect_equal(sum(arabidopsisThalianaRefseq@ranges@width), 3800001)
    expect_equal(length(packMatches[, 1]), 6)
    expect_equal(length(packMatches[1, ]), 7)
})

test_that("type of dataset is as expected", {
    expect_is(arabidopsisThalianaRefseq, "DNAStringSet")
    expect_is(packMatches, "data.frame")
})

unlink("tempTestOutput", recursive = TRUE)