ac.scan: Scan a Protein in Search of Acetylation Sites

In jcaledo/ptm_0.1.1: Analyses of Protein Post-Translational Modifications

Description

Scans the indicated protein in search of acetylation sites.

Usage

ac.scan(up_id, db = 'all')

Arguments

up_id	a character string corresponding to the UniProt ID.
db	the database where to search. It should be one among 'PSP', 'dbPTM', 'all'.

Details

If db = 'all' has been selected, it may hapen that the same residue appears in several rows if it is present in diffent databases.

Value

Returns a dataframe where each row corresponds to an acetylable residue.

Author(s)

Juan Carlos Aledo

References

Hornbeck et al. Nucleic Acids Res. 2019 47:D433-D441, (PMID: 30445427).

Huang et al. Nucleic Acids Res. 2019 47:D298-D308, (PMID: 30418626).

See Also

meto.scan(), p.scan(), me.scan(), ub.scan(), su.scan(), gl.scan(), sni.scan(), ni.scan(), ptm.scan(), reg.scan(), dis.scan()

Examples

ac.scan('P01009', db = 'PSP')

jcaledo/ptm_0.1.1 documentation built on April 4, 2020, 3:48 a.m.